Publications Citing CLARiTY Spectrophotometers
LATEST PUBLICATIONS
Use of an integrating cavity spectrometer to easily determine beer SRM color without filtration, centrifugation or numerical correction
Scott C. Bailey-Hartsel, Ph.D., University of Wisconsin-Eau Claire
Title of upcoming 2023 publication
IRBP protects retinoids from photodecomposition and effect of glycation – Pump-probe paradigm using an integrated cavity light toxicity chamber and rapid scanning spectrophotometry
Ernest M. Lam; Jason Newbaker; Elisabeth Millsap; Laura L. Valdez4; Andrew Tsin; Federico Gonzalez-Fernandez
Obtaining absorbance spectra from turbid retinal cell and tissue suspensions - Beating the light-scatter problem
Federico Gonzalez-Fernandez, M.D. , Ph.D., VA Medical Center, Jackson, MS
Title of accepted publication in 2023 Experimental Eye Research
Obtaining absorbance spectra from turbid retinal cell and tissue suspensions - Beating the light-scatter problem
Federico Gonzalez-Fernandez, Richard DeSa,
Experimental Eye Research Volume 230, May 2023
Transition-Metal Isocorroles as Singlet Oxygen Sensitizers
Simon Larsen, Joseph A. Adewuyi, Gaël Ung*, and Abhik Ghosh*
norg. Chem. 2023, 62, 19, 7483–7490
Publication Date:May 4, 2023
Transition-Metal Isocorroles as Singlet Oxygen Sensitizers
Simon Larsen, Joseph A. Adewuyi, Gaël Ung, and Abhik Ghosh Inorg. Chem. 2023
RAPID KINETICS
Blood triggered rapid release porous nanocapsules
Tiffany P. Gustafson, Sergey A. Dergunov, Walter J. Akers, Qian Cao, Selena Magalotti, Samuel Achilefu, Eugene Pinkhassik and Mikhail Y. Berezin
RSC Advances, 2013, 3, 5547
Introducing [Mn(CO)3(tpa-κ3N)]+ as a novel photoactivatable CO-releasing molecule with well-defined iCORM intermediates – synthesis, spectroscopy, and antibacterial activity
Christoph Nagel, Samantha McLean, Robert K. Poole, Holger Braunschweig, Thomas Kramer, & Ulrich Schatzschneider
Dalton Trans., 2014,43, 9986-9997
In situ spectroscopy on intact Leptospirillum ferrooxidans reveals that reduced cytochrome 579 is an intermediate in the iron respiratory chain
Robert C. Blake II and Megan N. Griff
Front. Microbiol. 2012; 3:136
MATERIALS
Surface-Bound Ruthenium Diimine Organometallic Complexes: Excited-State Properties
Ichire, O, et al.
Organometallics 2014, 33, 10, 2467-2478
Ink-Jet Printed Nanoparticle Alignment Layers: Easy Design and Fabrication of Patterned Alignment Layers for Nematic Liquid Crystals
Hegmann, T, et al
Particle Systems Characterization, 2014; 31 (2), 257-265
Dye-Loaded Porous Nanocapsules Immobilized in a Permeable Polyvinyl Alcohol Matrix: A Versatile Optical Sensor Platform
Pinkhassik, E, et al.
Anal. Chem. 2012, 84, 6, 2695-2701
Catalytic ship-in-a-bottle assembly within hollow porous nanocapsules
Pinkhassik, E, et al.
New J. Chem., 2014,38, 481-485
Selectively Initiated Ship-In-A-Bottle Assembly of Yolk–Shell Nanostructures
Pinkhassik, E, et al.
Chem. Mater., 2014, 26 (2), pp 1126–1132
Sensitization of Eu3+ Luminescence in Eu:YPO4 Nanocrystals
Lin, C, et al
J. Phys. Chem. C, 2013, 117 (11), pp 5953–5962
Synergistic Co-Entrapment and Triggered Release in Hollow Nanocapsules with Uniform Nanopores
Pinkhassik, E & Dergunov, S
J. Am. Chem. Soc., 2011, 133 (49), pp 19656–19659
PROKARYOTES
In situ spectroscopy on intact Leptospirillum ferrooxidans reveals that reduced cytochrome 579 is an intermediate in the iron respiratory chain
Robert C. Blake II and Megan N. Griff
Front. Microbiol. 2012; 3:136
Interaction of the carbon monoxide-releasing molecule Ru(CO)3Cl(glycinate) (CORM-3) with Salmonella enterica serovar Typhimurium: in situ measurements of CO binding by integrating cavity dual beam spectrophotometry
Namrata Rana, Samantha McLean, Brian E. Mann and Robert K. Poole
Microbiology, 2014 Dec;160 (Pt 12):2771-9
Introducing [Mn(CO)3(tpa-κ3N)]+ as a novel photoactivatable CO-releasing molecule with well-defined iCORM intermediates – synthesis, spectroscopy, and antibacterial activity
Christoph Nagel, Samantha McLean, Robert K. Poole, Holger Braunschweig, Thomas Kramer, & Ulrich Schatzschneider
Dalton Trans., 2014,43, 9986-9997
In situ Spectroscopy Reveals that Microorganisms in Different Phyla Use Different Electron Transfer Biomolecules to Respire Aerobically on Soluble Iron
Robert C. Blake II, Micah D. Anthony, Jordan D. Bates, Theresa Hudson, Kamilya M. Hunter, Brionna J. King, Bria L. Landry, Megan L. Lewis and Richard G. Painter
Front. Microbiol., 08 December 2016 | http://dx.doi.org/10.3389/fmicb.2016.01963
Antimicrobial activity of the manganese photoactivated CO-releasing molecule [Mn(CO)3(tpa-κ3N)]+ against a pathogenic Escherichia coli that causes urinary infections
M Tinajero-Trejo, N Rana, C Nagel, HE Jesse, TW Smith, LK Wareham, M Hippler, U Schatzschneider, RK Poole
Antioxidants & Redox Signaling 2016; 24, 765-780
The Multicenter Aerobic Iron Respiratory Chain of Acidithiobacillus ferrooxidans Functions as an Ensemble with a Single Macroscopic Rate Constant
Ting-Feng Li, Richard G. Painter, Bhupal Ban and Robert C. Blake II
Journal of Biological Chemistry, 2015; 290, 18293-18303
The RUBISCO to Photosystem II Ratio Limits the Maximum Photosynthetic Rate in Picocyanobacteria
Zorz JK, Allanach JR, Murphy CD, Roodvoets MS, Campbell DA, and Cockshutt AM
Life. 2015, 5, 403-417.
Oxidation of Cytochrome 605 Is the Rate-Limiting Step when Ferrimicrobium acidiphilum Respires Aerobically on Soluble Iron
Robert C Blake 2nd, Jessie J Guidry, Micah D Anthony, Bhupal Ban, Kayla A Smith, Noelle N Walton, Richard G Painter
Pubmed, 2020 Oct 28
EUKARYOTES
Label-free, Direct Measurement of Protein Concentrations in Turbid Solutions with a UV-Vis Integrating Cavity Absorbance Spectrometer.
Nicholas R. Larson, Yangjie Wei, and Charles Russell Middaugh
Anal Chem. 2018 Mar 22. doi: 10.1021/acs.analchem.8b00502. [Epub ahead of print]
Action spectrum of photoinhibition in the diatom Phaeodactylum tricornutum
Vesa Havurinne, Esa Tyystjärvi
Plant Cell Physiol. 2017 Oct 20. doi: 10.1093/pcp/pcx156. [Epub ahead of print]
Arctic Micromonas uses protein pools and non-photochemical quenching to cope with temperature restrictions on Photosystem II protein turnover
G Ni, G Zimbalatti, CD Murphy, AB Barrett, CM Arsenault, G Li, AM Cockshutt, DA Campbell
Photosynthesis Research, 2016; DOI: 10.1007/s11120-016-0310-6
Photoinactivation of Photosystem II in Prochlorococcus and Synechococcus
Murphy CD, Roodvoets MS, Austen EJ, Dolan A, Barnett A, Campbell DA
PLoS ONE, 2017. 12(1): e0168991.
Plants and Light Manipulation: The Integrated Mineral System in Okra Leaves
Pierantoni M, Tenne R, Brumfeld V, et al.
Advanced Science. 2017;4(5):1600416.
Rapid and sensitive quantitation of heme in hemoglobinized cells
Jason R. Marcero, Robert B. Piel III, Joseph S. Burch, and Harry A. Dailey
BioTechniques 61:83-91 (August 2016)
Feedback Regulation and Time Hierarchy of Oxidative Phosphorylation in Cardiac Mitochondria
KC Vinnakota, JN Bazil, F Van Den Bergh, RW Wiseman, DA Beard
Biophysical Journal 2016; 110, 972-980
How to obtain a rhodopsin spectrum from a turbid suspension - beating the light scatter problem
Federico Gonzalez-Fernandez and Richard J. DeSa
Poster at ARVO 2014 Annual Meeting
Rapid and sensitive quantitation of heme in hemoglobinized cells
Jason R. Marcero, Robert B. Piel III, Joseph S. Burch, and Harry A. Dailey
BioTechniques 61:83-91 (August 2016)
Feedback Regulation and Time Hierarchy of Oxidative Phosphorylation in Cardiac Mitochondria
KC Vinnakota, JN Bazil, F Van Den Bergh, RW Wiseman, DA Beard
Biophysical Journal 2016; 110, 972-980
How to obtain a rhodopsin spectrum from a turbid suspension - beating the light scatter problem
Federico Gonzalez-Fernandez and Richard J. DeSa
Poster at ARVO 2014 Annual Meeting
Membrane-anchored cyclic peptides as effectors of mitochondrial oxidative phosphorylation
K Shirey, K Stover, J Cleary, N Hoang, JP Hosler
Biochemistry, 2016; 55, 2100-2111
Rising CO2 Interacts with Growth Light and Growth Rate to Alter Photosystem II Photoinactivation of the Coastal Diatom Thalassiosira pseudonana
Gang Li and Douglas A. Campbell
PLoS ONE;Jan2013, Vol. 8 Issue 1, Special section p1
ARVO 2016 poster:
Absorbance & Fluorescence on Intact Frog Retina
ARVO 2015 talk:
Integrating Sphere…Study Retinoid Photodecomposition
ICAM: The technology that paved the way for CLARiTY
Spectral Absorption of Turbid Systems Using Diffuse Light
Bateman, J.B., Monk, G.W., Science, 121 (3143), 441 (1955).
Science, 121 (3143), 441 (1955).
“The nature of the association between absorbing and scattering structures in living cells is undoubtedly complex; even when all scattered light is collected, the contributions of different substances to the total absorption may depend not only on their quantity but also on their location within the cell.”
Spectral absorption of prodigiosin in intact cells
Monk, G.W.
Journal of Bacteriology, 74, 71 (1957).
“The nature of the association between absorbing and scattering structures in living cells is undoubtedly complex; even when all scattered light is collected, the contributions of different substances to the total absorption may depend not only on their quantity but also on their location within the cell.”
Theory of absorption and scattering within integrating spheres
Richetta, P.J.
Journal of the Optical Society of America, 55(1), 21 (1965).
“This paper reports a theory of integrating spheres filled completely with absorbing and scattering material. The development is oriented toward describing the behavior of such an integrating sphere when it is used as a spectrophotometer. The output ratio and effective light-path length of an integrating sphere spectrophotometer are introduced.”
Integrating Cavity Spectroscopy
Elterman, P.
Applied Optics, 9 (9), 2140 (1970).
“This method has the virtue of being independent of the scattering within the material sample, the reflectivity of the material surface, and the geometry of the sample.”
Integrating cavity absorption meter
Fry, E.S., Kattawar, G.W., Pope, R.M.
Applied Optics, 31(12), 2055 (1992).
“In contrast to Elterman’s work, here we emphasize an integrating cavity that is completely filled with an absorbing sample, which generally will be considered to be an aqueous suspension or solution. Because the diffuse reflecting cavity walls have high reflectivity, the effective absorption length in the sample is many times the diameter of the integrating cavity…Measurement of very small absorptions is facilitated by the use of long path lengths through the sample…this integrating cavity concept is especially sensitive to small absorptions.”
On recording the true absorption spectrum and the scattering spectrum of a turbid sample: application to cell suspensions of the cyanobacterium Anabaena variabilis
Merzlyak, M.N., Naqvi, K.R.
Journal of Photochemistry and Photobiology B, 58, 123(2000)
“An integrating sphere is often used for recording the absorption spectrum of a turbid sample. If the sample is placed inside the sphere, scattering losses are eliminated, but the recorded spectrum suffers from other distortions.”
Measuring the absolute quantum efficiency of luminescent materials
Rohwer, L.S., Martin, J.E.
Journal of Luminescence, 115, 77 (2005)
“We conclude that this diffuse light method gives repeatable values comparable to those currently accepted….We use the approximation that the light in the integrating sphere, after hitting the diffuser, can be described as a gas of photons, so that the photon flux is uniform in all directions.”
Quantitative spectrophotometry using integrating cavities
Javorfi, T., Erostyak, J., Gal, J., Buzady, A., Menczel, L., Garab, G., Naqvi, K. R.
Journal of Photochemistry & Photobiology, B: Biology, 82, 127 (2006)
“We have developed a convenient and reliable calibration procedure which provides distortion-free spectra in a broad concentration range of dilute solutions and also for scattering samples.”